PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62631.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 485aa    MW: 54016 Da    PI: 9.7472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62631.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08390439147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       EPS62631.1 390 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFenaKHRTYVDLKDKWKTL 439
                      679***********************9888888**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.007385444IPR017930Myb domain
SMARTSM007171.1E-7389442IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-11390440IPR009057Homeodomain-like
SuperFamilySSF466896.13E-16391472IPR009057Homeodomain-like
CDDcd116604.08E-17391441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MARLDDYGFD GYYHLPPVPR AARSIRAKLS RSRTRCLFRK RAADADAGPH RNSFAFDLLS  60
NEEADFCKGG RGDFLVTELV SDRRDEPERP ASGITCCSDG GGGGGGSGND ECRLRLGMFS  120
PPMPSSSSLQ EEQQDGYVNN NNNKEEEEWD DDEEKKPPAF VSSADSVRHD NENLSLKKPF  180
GEDNDEGISD PNRKSSSRCF RDYPFKKRKL FDSQAIPTPS GGGGGGHDSS PLRSHDSKVK  240
LKIKSFKVPE LVIEIPETAT IGSLQRRVMK AITAVLGGGL RVGVTLHGKK IRDDTKTLLQ  300
AGICHENSRI DALGFSLEPS PPTPPLQIHP ENRTTPLPMI PPPMMMMMIA GQNNSDRDSP  360
SRRRLTATES KALVPFRKSK RSESAQRRIR RPFTVAEVEA LVQAVEKLGT GRWRDVKLRA  420
FENAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAFW SQQQLKAQPN  480
SSLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-543774744101Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.11e-114PREDICTED: telomere repeat-binding protein 5
RefseqXP_011089488.11e-114PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E32e-99TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLS8CDQ80.0S8CDQ8_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000054761e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-74TRF-like 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]